This is a known driver problem and can be solved by applying the patch described here:
http://rickcaylor.websitetoolbox.com/post/stv0900_core.c-patch-5481028?highlight=stv0900
You only need the Pendragon/Cletus2k FIFO patch (as described in the thread)
After applying the patch manually (only the TSFIFO MANSPEED lines) on Ubuntu 13.04 with s2-liplianin-v39, I can recieve all Canal Digital HD channels on 12,015.000khz and 11,785.000khz without any glitches.
I have only been running my Anysee E7 S2 with the patched driver for a day, so I don't know if the patch has any serious side effects...
Good luck with the patching and compiling, it is actually quite fun :-)